Place the milk chocolate chips in a microwave-safe bowl and the white chocolate chips in another. Microwave one bowl on high for 1 minute. Remove and stir with a rubber spatula. (The chips should melt while you are stirring, but if they don't, you can continue to microwave for 15 more seconds, then stir again.) Wash and dry the spatula. Microwave the other bowl on high for 1 minute, and stir until the chocolate is melted.
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Line a large pan or cookie sheet with wax paper and lay the finished pretzels on the wax paper and then put them in the fridge for about two hours, which is about the time it takes for them to set. Once they are set, I then put them in a sealed container or large ziploc bag and store in the refrigerator.
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